详细信息
A haplotype-resolved genome of Mytella strigata, a globally invasive marine bivalve ( SCI-EXPANDED收录)
文献类型:期刊文献
英文题名:A haplotype-resolved genome of Mytella strigata, a globally invasive marine bivalve
作者:Zhang, Jiawei[1,2,3];Li, Siyao[1];Wang, Yiwei[1];Zhong, Shijie[1];Yang, Chuangye[1,4,5,6];Liao, Yongshan[1,4,5,6];Yuewen, Deng[1,4,5,6];Wang, Qingheng[1,4,5,6];Zheng, Zhe[1,4,5,6]
机构:[1]Guangdong Ocean Univ, Fisheries Coll, Zhanjiang 524088, Peoples R China;[2]Guangdong Prov Key Lab Aquat Anim Dis Control & Hl, Zhanjiang 524088, Peoples R China;[3]Key Lab Marine Ecol & Aquaculture Environm Zhanjia, Zhanjiang 524088, Peoples R China;[4]Guangdong Sci & Innovat Ctr Pearl Culture, Zhanjiang 524088, Peoples R China;[5]Pearl Breeding & Proc Engn Technol Res Ctr Guangdo, Zhanjiang 524088, Peoples R China;[6]Guangdong Ocean Univ, Pearl Res Inst, Zhanjiang 524088, Peoples R China
年份:2026
卷号:13
期号:1
外文期刊名:SCIENTIFIC DATA
收录:SCI-EXPANDED(收录号:WOS:001782751500004)、、WOS
基金:This work was supported by the Research on industrial innovation technology for Guangdong modern marine ranching (Grant no. 2024-MRI-001-03), Shellfish & Algae Industry Innovation Team of Guangdong Modern Agricultural Technology System (Grant no. 2024CXTD23), Guangdong Basic and Applied Basic Research Foundation (Grant no. 2024A1515011617, 2023A1515030048), and Guangdong Ocean University scientific research project funding (Grant no. 060302022305).
语种:英文
外文摘要:Mytella strigata, a bivalve mollusk native to the Atlantic coast of South America, has recently become a globally significant marine invasive species, posing serious threats to native ecosystems and aquaculture operations. Here, we report a haplotype-resolved, chromosome-level genome assembly of M. strigata (2n = 30), generated using high-fidelity (HiFi) long-read sequencing and high-throughput chromosome conformation capture (Hi-C). Two haplotypes were independently assembled: haplotype 1 (Hap1) spans 692.37 Mb with a contig N50 of 6.93 Mb, and haplotype 2 (Hap2) spans 683.91 Mb with a contig N50 of 7.61 Mb. Both assemblies were anchored to 15 chromosomes, achieving anchoring rates of 93.84% (Hap1) and 97.08% (Hap2). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis revealed high completeness, identifying 92.33% and 93.22% of expected single-copy orthologs in Hap1 and Hap2, respectively. We annotated 27,887 protein-coding genes and conducted analyses of gene functions. This high-quality genomic resource provides a foundation for investigating the genetic mechanisms underlying invasiveness and environmental adaptability in M. strigata.
参考文献:
正在载入数据...
